Chemical Synthetic Biology - Xenobiology

Publications

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Schipp, C. J., Ma, Y., Al-Shameri, A. Contestabile, R, Budisa*, N. and DiSalvo*, M.L.
An Engineered Escherichia coli Strain with Synthetic Metabolism for In-cell Production of Translationally Active Methionine Derivatives

ChemBioChem 2020 , 21(24), 3525-3538

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Tseng, H.W., Baumann, T., Sun, H., Wang, Y. S., Ignatova, Z. and Budisa, N.
Expanding the Scope of Orthogonal Translation with Pyrrolysyl-tRNA Synthetases Dedicated to Aromatic Amino Acids.

Molecules 2020 , 25(19), 4418

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Schmitt, F.-J., Frielingsdorf, S. Friedrich, T. and Budisa, N.
Courses Based on iGEM/BIOMOD Competitions Are the Ideal Format for Research‐Based Learning of Xenobiology.

ChemBioChem 2020 , Online ahead of print

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Agostini, F., Sinn, L., Petras, D., Schipp, C.J., Kubyshkin, V., Berger, A.A., Rappsilber, J., Dorrestein, P.C., Budisa, N. and Koksch, B.
Multi-omics analysis provides insight into the laboratory evolution of Escherichia coli towards the metabolic usage of fluorinated indoles.

ACS Cent. Sci 2020 , Online ahead of print

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Deng, J., Viel, J-H., Kubyshkin, V., Budisa, N. and Kuipers, O.
Conjugation of Synthetic Polyproline Moietes to Lipid II Binding Fragments of Nisin Yields Active and Stable Antimicrobials.

Front. Microbiol. 2020 , 11:575334

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Heidari-Karbalaei, H. R. and Budisa, N.
Combating antimicrobial resistance with new-to-nature lanthipeptides created by genetic code expansion.

Front. Microbiol. 2020 , 1:590522

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Sun, H., Jia, H., Ramirez-Diaz, D. A., Budisa, N. and Schwille, P.
Fine‐tuning protein self‐organization by orthogonal chemo‐optogenetic tools

Angew Chem Int Ed Engl 2020 , Online ahead of print

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Perfumo, A., von Sass, G.J.F., Nordmann, E.L., Budisa, N. and Wagner, D.
Discovery and characterization of a new cold-active protease from an extremophilic bacterium via comparative genome analysis and in vitro expression

Front. Microbiol. 2020 , 11:881

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Budisa, N., Kubyshkin, V. and Schmidt, M.
Xenobiology: a journey towards parallel life forms

ChemBioChem 2020 , 21(16), 2228-2231

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Lauster, D., Klenk, S., Ludwig, K.; &, e. al, Budisa, N., Netz., R., Böttcher, C., Liese, S., Herrmann, A. and Hackenberger, C.P.
Phage capsid nanoparticles with defined ligand arrangement block influenza virus entry - an antiviral strategy

Nat Nanotechnol 2020 , 15, 373-379

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Schneider, T., Brüssow, N., Yuvanc, A. and Budisa, N.
Synthesis of New Aza- and Thia-Crown Ether Based Amino Acids

ChemistrySelect 2020 ,5(9), 2854-2857

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Schmitt, F.-J., Budisa, N. and Krause-Rehberg, R.
Student-centred research-based projects are highly motivating

84th DPG Spring Meeting of the German Physical Society 2020

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Budisa, N. and Schmidt, M.
Alternative Biofacts - Life as we don't (yet) know it

Art as we don’t know it. 2020 , Book published by Aalto University Publication Series: Helsinki; pp 75-83

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Kubyshkin, V., Budisa, N.
The Alanine World Model for the Development of the Amino Acid Repertoire in Protein Biosynthesis

Int. J. Mol. Sci. 2019 ,20(21), e5507

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Kubyshkin, V., Grage, S.L., Ulrich, A.S., Budisa N.
Bilayer thickness determines the alignment of model polyproline helices in lipid membranes

Phys Chem Chem Phys. 2019 ,21(40), 22396-22408

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Diwo. C, Budisa, N.
Alternative Biochemistries for Alien Life: Basic Concepts and Requirements for the Design of a Robust Biocontainment System in Genetic Isolation

Genes 2019 ,10(1),17

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Gerrits, M., Merk, H., Budisa, N.
Site-Specific Chemoselective Pyrrolysine Analogues Incorporation Using the Cell-Free Protein Synthesis System

ACS Synth. Biol. 2019 ,8(2), 381-390

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Nojoumi, S., Ying, M., Schwagerus, S., Hackenberger, C.P.,R., Budisa, N.
In-Cell Synthesis of Bioorthogonal Alkene Tag S-Allyl-Homocysteine and Its Coupling with Reprogrammed Translation

Int. J. Mol. Sci. 2019 ,20(2), 2299

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Baumann, T., Hauf, M., Schildhauer, F., Eberl, K.B., Durkin, P.M., Deniz, E., Löffler, J.G., Acevedo-Rocha, C.G., Jaric, J., Martins, B.M., Dobbek, H., Bredenbeck, J., Budisa, N.
Site-Resolved Observation of Vibrational Energy Transfer Using a Genetically Encoded Ultrafast Heater

Angew. Chem. Int. Ed. Engl. 2019 ,58(9), 2899-2903

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Baumann, T., Hauf, M.; Richter, F., Albers, S., Möglich, A., Ignatova, Z., Budisa, N.
Computational Aminoacyl-tRNA Synthetase Library Design for Photocaged Tyrosine

Int. J. Mol. Sci. 2019 ,20(9), 2343

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Kubyshkin, V., Budisa, N.
Promotion of the collagen triple helix in a hydrophobic environment

Org. Biomol. Chem. 2019 ,17(2), 2502-2507

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Kubyshkin, V., Budisa, N.
Anticipating alien cells with alternative genetic codes: away from the alanine world!

Curr. Opin. Biotechnol. 2019 ,60, 242-249

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Schneider, T., Budisa, N.
Expanding the DOPA Universe with Genetically Encoded, Mussel-Inspired Bioadhesives for Material Sciences and Medicine

ChemBioChem 2019 2019 ,20, 1-29

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Schneider, T.; Budisa, N.
Synthesis of a new metal chelating amino acid: Terpyridyl-alanine

Tetrahedron Lett. 2019 ,2018(19), 2053-2063

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Budisa, N., B Fehse, B.; Müller-Röber, B., Reich, J.; Walter, J.
Accounting for a High Technology - Fourth Genetic Technology Report of Interdisciplinary Research Group of the Berlin-Brandenburg Academy of Sciences and Humanities

Nomos Verlag, Germany 2018 ,203-236

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Ma, Y., Salvo, M. L., Budisa, N.
Self-Directed in Cell Production of Methionine Analogue Azidohomoalanine by Synthetic Metabolism and Its Incorporation into Model Proteins

Mol. Biol. 2018 (1),127-135

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Stempel E., Kaml R. F., Budisa, N., Kalesse, M.
Painting argyrins blue: Negishi cross-coupling for synthesis of deep-blue tryptophan analogue ß-(1-azulenyl)-l alanine and its incorporation into argyrin C.

Bioorg. Med. Chem. 2018 , in Press.

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Biava, H.; Schreiber, T., Katz, S., Vo¨ller, J-S., Stolarski, M., Schulz, C., Michael, N., Budisa, N., Kozuch, J., Tillmann, U., Hildebrandt, P.
Long-Range Modulations of Electric Fields in Proteins

J. Phys. Chem. B 2018 B122(35),8330-8342

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Schneider, T., Kubyshkin, V., Budisa, N.
Synthesis of a Photo-Caged DOPA Derivative by Selective Alkylation of 3,4-Dihydroxybenzaldehyde

Eur. J. Org. Chem. 2018 2018(18),2053-2063

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Nickling, J. H., Baumann, T., Schmitt, F. J., Bartholomae, M., Kuipers, O. P., Friedrich, T., Budisa, N.
Antimicrobial Peptides Produced by Selective Pressure Incorporation of Non-canonical Amino Acids.

J. Vis. Exp. 2018 e57551(135)

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Baumann, T., Schmitt, F. J., Pelzer, A., Spiering, V. J., Freiherr von Sass, G. J., Friedrich, T., Budisa, N.
Engineering 'Golden' Fluorescence by Selective Pressure Incorporation of Non-canonical Amino Acids and Protein Analysis by Mass Spectrometry and Fluorescence.

J. Vis. Exp. 2018 e57017(134)

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Kubyshkin, V., Grage, S. L., Bürck, J., Ulrich, A. S., Budisa, N.
Transmembrane Polyproline Helix

Phys. Chem. Lett. 2018 9(9),2170-2174

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Bartholomae, M., Baumann, T., Nickling, J.H., Peterhoff, D., Wagner, R., Budisa, N., Kuipers, O. P.
Expanding the genetic code of Lactococcus lactis and Escherichia coli to incorporate non-canonical amino acids for production of modified lantibiotics

Front. Microbiol. 2018 9,657

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Kubyshkin, V., Budisa, N.
Exploring hydrophobicity limits of polyproline helix with oligomeric octahydroindole-2-carboxylic acid

J. Pept. Sci. 2018 24(4-5),e3076

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Kubyshkin, V., Pridma, S., Budisa, N.
“Comparative effects of trifluoromethyl-and methyl-group substitutions in proline

New J. Chem. 2018 , 42, 13461-13470

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Serikawa, T., Spanos, C., vonHacht, A., Budisa, N., Rappsilber, J., Kurreck, J.“Comparative effects of trifluoromethyl-and methyl-group substitutions in proline
Comprehensive identification of proteins binding to RNA G-quadruplex motifs in the 5' UTR of tumor-associated mRNAs

Biochimie 2018 , 144, 169-184

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Jan-Stefan Völler, Morana Dulic, Ulla I. M. Gerling-Driessen, Hernan Biava, Tobias Baumann, Nediljko Budisa*, Ita Gruic-Sovulj*, and Beate Koksch*
Discovery and Investigation of Natural Editing Function against Artificial Amino Acids in Protein Translation

ACS Cent. Sci. 2017 ,3 (1),73-80

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Federica Agostini, Jan-Stefan Völler, Beate Koksch, Carlos G. Acevedo-Rocha, Vladimir Kubyshkin and Nediljko Budisa
Biocatalysis with Unnatural Amino Acids: Enzymology Meets Xenobiology

Angew. Chem. Int. Ed. 2017, 56, 2-26

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Vladimir Kubyshkin and Nediljko Budisa
Amide rotation trajectories probed by symmetry

Biomol. Chem. 2017, 15, 6764-6772

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Allison Ann Berger, Jan-Stefan Völler, Nediljko Budisa and Beate Koksch
Deciphering the Fluorine Code—The Many Hats Fluorine Wears in a Protein Environmenty

Acc. Chem. Res. 2017, 50(9), 2093-2103

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Vladimir Kubyshkin and Nediljko Budisa
Synthetic alienation of microbial organisms by using genetic code engineering: Why and how?

Biotechnol. J. 2017, 12(8),

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Vladimir Kubyshkin and Nediljko Budisa
Construction of a polyproline structure with hydrophobic exterior using octahydroindole-2-carboxylic acid

Org. Biomol. Chem. 2017, 15, 619-627

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Jan-Stefan Völler, M. G. Hoesl and Prof. Dr. Nediljko Budisa
Künstliche Evolution des genetischen Codes von Mikroorganismen (In German)

BIOspektrum 2017, 21, 146-149

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Jan-Stefan Völler, Hernan Biava, Peter Hildebrandt and Nediljko Budisa
An expanded genetic code for probing the role of electrostatics in enzyme catalysis by vibrational Stark spectroscopy

Biochim. Biophys. Acta 2017, 1861, 3053-3059

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Jan-Stefan Völler and Nediljko Budisa
Coupling genetic code expansion and metabolic engineering for synthetic cells

Curr. Op. Biotechnol. 2017, 48, 1-7

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Markus Schmidt, Lei Pei and Nediljko Budisa
Xenobiology: State-of-the-Art, Ethics, and Philosophy of New-to-Nature Organisms

Synthetic Biology-Metabolic Engineering 301-315

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Mykhailiuk, P., Kishko, I., Kubyshkin, V., Budisa, N. and Cossy, J.
Selective 19F-Labeling of Functionalized Carboxylic Acids with Difluoromethyl Diazomethane (CF2HCHN2)

Chem. Eur. J. 2017, 23, 13279-13283

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Kubyshkin, V., Acevedo-Rocha, C. G. and Budisa, N.
On universal coding events in protein biogenesis

Biosystems 2017

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Baumann, T., Nickling, J. H., Bartholomae, M., Buivydas, A., Kuipers, O. P. and Budisa, N.
Prospects of In vivo Incorporation of Non-canonical Amino Acids for the Chemical Diversification of Antimicrobial Peptides

Front. Microbiol. 2017, 8, 124

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Schumacher, D., Lemke, O., Helma, J., Gerszonowicz, L., Waller, V., Stoschek, T., Durkin, P. M., Budisa, N., Leonhardt, H., Keller, B. and Hackenberger, C.
Broad substrate tolerance of tubulin tyrosine ligase enables one-step site-specific enzymatic protein labeling

Chem. Sci. 2017, 8, 3471-3478

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Schneider, T., Martin, J., Durkin, P. M., Kubyshkin, V. and Budisa, N.
The Regioselective Synthesis of o-Nitrobenzyl DOPA Derivatives

Synthesis 2017, 49, 2691-2699

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Mykhailiuk, P., Kubyshkin, V., Bach, T. and Budisa, N.
Peptidyl-Prolyl Model Study: How Does the Electronic Effect Influence the Amide Bond Conformation?

J. Org. Chem. 2017, 82(17), 8831-8841

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Kubyshkin, V. and Budisa, N.
Hydrolysis, polarity, and conformational impact of C-terminal partially fluorinated ethyl esters in peptide models

Beilstein J. Org. Chem. 2017, 2442-2457

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Serikawa T., Spanos C., von Hacht A., Budisa N., Rappsilber J. Kurreck J.
Comprehensive identification of proteins binding to RNA G-quadruplex motifs in the 5' UTR of tumor-associated mRNAs

Biochemie 2017, 144, 2442-2457

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Völler, J.-S., To, T., Biava, H., Koksch, B. and Budisa, N.
Global substitution of hemeproteins with noncanonical amino acids in Escherichia coli with intact cofactor maturation machinery

Enzyme Microb. Technol. 2017, 106, 55-59

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Hauf, M., Richter, F., Schneider, T., Faidt, T., Martins, B. M., Baumann, T., Durkin, P., Dobbek, H., Jacobs, K., Moeglich, A. and Budisa, N.
Photoactivatable Mussel-Based Underwater Adhesive Proteins by an Expanded Genetic Code

ChembioChem 2017, 18, 1819-1823

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Exner, M. P., Kuenzl, T., Schwagerus, S., To, T., Ouyang, Z., Hoesl, M. G., Lensen, M. C., Hackenberger, C. P. R., Panke, S. and Budisa, N.
Design of S-Allylcysteine in Situ Production and Incorporation Based on a Novel Pyrrolysyl-tRNA Synthetase Variant

ChembioChem 2017, 85-90

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Worst, E. G., Exner, M. P., De Simone, A., Schenkelberger, M., Noireaux, V., Budisa, N. and et al.
Residue-specific Incorporation of Noncanonical Amino Acids into Model Proteins Using an Escherichia coli Cell-free Transcription-translation System

J. Vis. Exp. 2016, e54273

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Köhling, S., Exner, M. P., Nojoumi, S., Schiller, J., Budisa, N. and Rademann, J.
One-Pot Synthesis of Unprotected Anomeric Glycosyl Thiols in Water for Glycan Ligation Reactions with Highly Functionalized Sugars

Angew. Chem. Int. Ed. 2016, 55 15510-15514

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De Simone, A., Hoesl, M. G. and Budisa, N.
Congeneric lipases with improved catalytic activity and substrate accessibility / Engineering lipases with an expanded genetic code

Applied Biocatalysis From Fundamental Science to Industrial Applications 2016, Wiley-VCH

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Avcilar-Kucukgoze, I., Bartholomäus, A., Cordero Varela, J., Kaml, R., Neubauer, P., Budisa, N. and Ignatova, Z.
Discharging tRNAs: a tug of war between translation and detoxification in Escherichia coli

Nucleic Acids Res. 2016, 44, 8324-8334

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Acevedo-Rocha, C. and Budisa, N.
Xenomicrobiology: a roadmap for genetic code engineering

Microb. Biotechnol. 2016, 9, 666-676

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Exner, M. P., Köhling, S., Rivollier, J., Gosling, S., Srivastava, P., Palyancheva, Z. I., Herdewijn, P., Heck, M.-P., Rademann, J. and Budisa, N.
Incorporation of Amino Acids with Long-Chain Terminal Olefins into Proteins

Molecules 2016, 21, 287

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Kubyshkin, V. and Budisa, N.
cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline

Beilstein J. Org. Chem. 2016, 12, 589-593

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Kubyshkin, V., Durkin, P. M. and Budisa, N.
Energetic contribution to both acidity and conformational stability in peptide models

New J. Chem. 2016, 40, 5209-5220

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Engelhard, M., Boelker, M., Budisa, N. and Winter, G.
The New Worlds of Synthetic Biology

Synthetic Biology Analyzed 2016, 44, 1-25

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Boelker, M., Engelhard, M. and Budisa, N.
Diverese Layers of Live

Synthetic Biology Analyzed 2016, 44, 27-50

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Husak, A., Noichl, B., Sumanovac-Ramljak, T., Sohora, M., Skalamera, D., Budisa, N. and Basaric, N.
Photochemical formation of quinone methides from peptides containing modified tyrosine

Organic & Biomolecular Chemistry 2016, 14, 10894-10905

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Durkin, P. M. and Budisa, N.
Design and Application of Autofluorescent Proteins by Biological Incorporation of Intrinsically Fluorescent Noncanonical Amino Acids

Fluorescent Analogs of Biomolecular Building Blocks 2016, Wiley, 91-124

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Baumann, T., Exner, M. P. and Budisa, N.
Orthogonal Protein Translation Using Pyrrolysyl-tRNA Synthetases for Single - and Multiple-Noncanonical Amino Acid Mutagenesis

Adv. Biochem. Eng. Biotechnol. 2016, Springer, 1-19

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Baumann, T., Exner, M. P. and Budisa, N.
Towards reassignment of the AUG Methionine codon to two different non-canonical amino acids in bacterial translation

Croatica Chemica Acta 2016, 89, 1-19

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Kuthning, A., Durkin, P., Oehm, S., Hoesl, M., Budisa, N. and Süssmuth, R.
Towards Biocontained Cell Factories: An Evolutionarily Adapted Escherichia coli Strain Produces a New-to-nature Bioactive Lantibiotic Containing Thienopyrrole-Alanine

Scientific Reports 2016, 6

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Nischan, N., Herce, H., Natale, F., Bohlke, N., Budisa, N., Cardoso, M. C. and Hackenberger, C. P. R.
Covalent Attachment of Cyclic TAT Peptides to GFP Results in Protein Delivery into Live Cells with Immediate Bioavailability

Angew. Chem. Int. Ed. Eng. 2015, 54, 1950-1953

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Dietz, D., Kubyshkin, V. and Budisa, N.
Applying ?-substituted prolines in the foldon peptide: polarity contradicts preorganization

ChembioChem 2015, 16, 403-406

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Kubyshkin, V., Afonin, S., Kara, S., Budisa, N., Mykhailiuk, P. K. and Ulrich, A. S.
?-(S)-Trifluoromethyl proline: Evaluation as a structural substitute of proline for solid state 19F-NMR peptide studies

Org. Biomol. Chem. 2015, 13, 3171-3181

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Budisa, N. and Hümpel, A.
Synthetic Biology: Is a new kind of Biological Engineering emerging?

Third gene technology report: Analysis of a high-tech sector. 2015

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Völler, J., Biava, H., Koksch, B., Hilderbrandt, P. and Budisa, N.
Orthogonal Translation Meets Electron Transfer: In Vivo Labeling of Cytochrome c for Probing Local Electric Fields

ChembioChem 2015, 16, 742-745

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Budisa, N.
Xenobiologie, künstliches Leben und genetische Firewall

Grenzüberschreitungen - Synthetische Biologie im Dialog. 2015, Verlag Karl Alber

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Jaric, J. and Budisa, N.
Design of orthogonal pairs for protein translation: selection systems for genetically encoding noncanonical amino acids in E. coli

Hydrocarbon and Lipid Microbiology Protocols: Cultivation 2015, Springer-Verlag

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Mühlberg, M., Hoesl, M. G., Kuehne, C., Dernedde, J., Budisa, N. and Hackenberger, C. P. R.
Orthogonal dual-modification of proteins for the engineering of multivalent protein scaffolds

Beilstein J. Org. Chem. 2015, 11, 784-791

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Müller-Werkmeister, H. M., Essig, M., Durkin, P., Budisa, N. and Bredenbeck, J.
Towards Direct Measurement of Ultrafast Vibrational Energy Flow in Proteins

Ultrafast Phenomena XIX 2015

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Albrecht, M., Lippach, A., Exner, M. P., Jerbi, J., Springborg, M., Budisa, N. and Wenz, G.
Site-specific conjugation of 8-ethynyl-BODIPY to a protein by [2+3] cycloaddition

Org. Biomol. Chem. 2015, 13, 6728-6736

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Worst, E. G., Exner, M. P., De Simone, A., Schenkelberger, M., Noireaux, V., Budisa, N. and Ott, A.
Cell-free expression with the toxic amino acid canavanine

Bioord. Med. Chem. Lett. 2015, 25, 3658-3660

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Noichl, B. P., Durkin, P. M. and Budisa, N.
Towards intrinsically colored peptides: The synthesis and investigation of the spectral properties of methylated azatryptophans in Trp-cage mutants

Biopolymers Peptide Science 2015, 104, 585-600

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Hoesl, M. G., Oehm, S., Durkin, P., Darmon, E., Peil, L., Aerni, H.-R., Rappsilber, J., Rinehart, J., Leach, D., Söll, D. and Budisa, N.
Chemical evolution of a bacterial proteome

Angew. Chem. Int. Ed. Engl. 2015, 54, 10030-10034

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Eisenreich, W., Joshi, M., Illarionov, B., Kacprzak, S., Lukaschek, M., Kothe, G., Budisa, N., Fischer, M., Bacher, A. and Weber, S.
Strategy for Enhancement of 13C-Photo-CIDNP NMR Spectra by Exploiting Fractional 13C-Labeling of Tryptophan

J. Phys. Chem. 2015, 119(43), 13934-13943

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Ma, Y., Thota, B. N. S., Haag, R. and Budisa, N.
Dendronylation: Residue-specific chemoselective attachment of oligoglycerol dendrimers on proteins with noncanonical amino acids

Bioorg. Med. Chem. Lett. 2015, 25, 5247-5249

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Doerfel, L. K., Wohlgemuth, I., Kubyshkin, V., Starosta, A. L., Wilson, D. N., Budisa, N. and V., R. M.
Entropic Contribution of Elongation Factor P to Proline Positioning at the Catalytic Center of the Ribosome

J. Am. Chem. Soc. 2015, 137, 12997-13006

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Budisa, N.
Life at the Speed of Light– From the From the Double Helix to the Dawn of Digital Life. By J. Craig Venter

Angew. Chem. Int. Ed. Engl. 2014, 53, 9421-9422

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Pournejati, R., Karbalaei-Heidari, H. R. and Budisa, N.
Secretion of Recombinant Archeal lipase Mediated by SVP2 Signal Peptide in Escherichia coli and its optimization by Response Surface Methodology

Protein Expr. Purif. 2014, 101, 84-90

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Biava, H.,Budisa, N.
Evolution of fluorinated enzymes: An emerging trend for biocatalyst stabilization

Eng. Life. Sci. 2014, 14, 340-351

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Bohlke, N. and Budisa, N.
Sense codon emancipation for proteome-wide incorporation of noncanonical amino acids: rare isoleucine codon AUA as a target for genetic code expansion

FEMS Microbiol Lett. 2014, 351, 133-144

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Budisa, N.
Xenobiology, New-to-Nature Synthetic Cells and Genetic Firewall

Curr. Org. Chem. 2014, 18, 936-943

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Ma, Y., Biava, H., Contestabile, R., Budisa, N. and di Salvo, M. L.
Coupling Bioorthogonal Chemistries with Artificial Metabolism: Intracellular Biosynthesis of Azidohomoalanine and its Incorporation into Recombinant Proteins

Molecules 2014, 19, 1004-1022

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Heinen, A., Wanke, F., Moos, S., Attig, S., Luche, H., Pal, P., Budisa, N., Fehling, H., Waisman, A. and Kurschus, F.
Improved method to retain cytosolic reporter protein fluorescence while staining for nuclear proteins

Cytometry A. 2014, 85, 621-627

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Budisa, N. and Schulze-Makuch, D.
Supercritical Carbon Dioxide and Its Potential as a Life-Sustaining Solvent in a Planetary Environment

Life 2014, 4, 331-340

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Budisa, N., Kubyshkin, V. and Schulze-Makuch, D.
Supercritical Carbon Dioxide and Its Potential as a Life-Sustaining Solvent in a Planetary EnvironmentFluorine-Rich Planetary Environments as Possible Habitats for Life

Life 2014, 4, 374-385

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Al Toma, R. S., Kuthning, A., Exner, M. P., Denisiuk, A., Ziegler, J., Budisa, N. and Süssmuth, R. D.
Site-Directed and Global Incorporation of Orthogonal and Isostructural Noncanonical Amino Acids into the Ribosomal Lasso Peptide Capistruin

ChembioChem 2014, 16, 503-509

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Budisa, N.
Expanded genetic code for the engineering of ribosomally synthetized and post-translationally modified peptide natural products (RiPPs)

Biotechnol. 2013, 4, 591-598

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Seemann, K., Bauer, A., Kindervater, J., Meyer, M., Besson, C., Luysberg, M., Durkin, P., Pyckhout-Hintzen, W., Budisa, N., Georgii, R., Schneider, C. M. and Kogerler, P.
Polyoxometalate-stabilized, water dispersible Fe2Pt magnetic nanoparticles

Nanoscale 2013, 6, 2511-2519

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Staudt, H., Hoesl, M. G., Dreuw, A., Serdjukow, S., Oesterhelt, D., Budisa, N., Wachtveitl, J. and Grininger, M.
Directed Manipulation of a Flavoprotein Photocycle

Angew. Chem. Int. Ed. Engl. 2013, 52, 8463-8466

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Acevedo-Rocha, C., Hoesl, M., Nehring, S., Royter, M., Wolschner, C., Wiltschi, B., Antranikian, G. and Budisa, N.
Non-canonical amino acids as a useful synthetic biological tool for lipase-catalysed reactions in hostile environments

Catal. Sci. Technol. 2013, 3, 1198-1201

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Biava, H. and Budisa, N.
Biocatalytic synthesis of (2S)-5,5,5-trifluoroleucine and improved resolution into (2S,4S) and (2S,4R) diastereoisomers

Tetrahedron Letters 2013, 54, 3662-3665

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Biava, H. and Budisa, N.
Obtention of enantiomerically pure 5,5,5-trifluoro-L-isoleucine and 5,5,5-trifluoro-L-alloisoleucine

J. Fluorine Chem. 2013, 156, 372-377

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Budisa, N.
Was ist Leben?

Wissenschaftliche Verlagsgesellschaft Stuttgart 2012

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Oldach, F., Al-Toma, R., Kuthning, A., Caetano, T., Mendo, S., Budisa, N. and Süssmuth, R. D.
Congeneric Lantibiotics from Ribosomal In Vivo Peptide Synthesis with Noncanonical Amino Acids

Angew. Chem. 2012, 51, 415-418

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Site-selective modification of proteins for the synthesis of structurally defined multivalent scaffolds

Chem. Commun. 2012, 48, 522-524

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Recent advances in genetic code engineering in Escherichia coli

Curr. Opin. Biotechnol. 2012, 23, 751-757

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Performance analysis of orthogonal pairs designed for an expanded eukaryotic genetic code

PloSONE 2012, e31992

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Congeneric bio-adhesive mussel foot proteins designed by modified prolines revealed a chiral bias in unnatural translation

Biotechnology and Bioprocess Engineering 1 2012, 17, 679-686

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Organic fluorine as a polypeptide building element: in vivo expression of fluorinated peptides, proteins and proteomes

Org. Biomol. Chem. 2012, 1, 7241-7261

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Design of protein congeners containing beta-cyclopropylalanine

Mol. BioSyst. 2012, 8, 2719-2723

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Evaluation of bicinchoninic acid as a ligand for copper(I)-catalyzed azide-alkyne bioconjugations

Org. Biomol. Chem. 2012, 10, 6629-6632

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Synthetische Biologie. Entwicklung einer neuen Ingenieurbiologie?

Berlin-Brandenburgische Akademie der Wissenschaften 2012

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Conjugation of Proteins by Installing BIO-Orthogonally Reactive Groups at Their N-Termini

PLoSONE 2012, e46741

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PLP-dependent Enzymes: a Powerful Tool for Metabolic Synthesis of. Non-canonical Amino Acids

Beilsten Symposium on Molecular Engineering and Control 2012, Logos Verlag Berlin

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Synthetic Biology of Autofluorescent Proteins

Fluorescent Proteins I - From Understanding to Design 2011, Springer-Verlag

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Code Engineering: Techniken und Anwendungen

Synthetische Biologie – acatech DISKUSSION XII 2011, Springer-Verlag

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Playing God by artificially synthesizing life in the laboratory – The historical and cultural perception and evaluation by the society

Angew. Chem. Int. Ed. Engl. 2011, 50, 11041-11042

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Trendbericht Synthetische Biologie: Techniken

Nachrichten aus der Chemie 2011, 59, 309-312

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Genetically Encoded Photocrosslinkers as Molecular Probes To Study G-Protein-Coupled Receptors (GPCRs)

Angew. Chem. Int. Ed. Engl. 2011, 51, 310-312

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Lipase Congeners Designed by Genetic Code Engineering

ChemcatChem 2011, 3, 213-221

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Enhancing the thermal stability of a single-chain Fv fragment by in vivo global fluorination of the proline residues

Mol. Biosys. 2011, 7, 258-265

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Expanding and Engineering the Genetic Code in a Single Expression Experiment

ChemBioChem 2011, 12, 552-555

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In Vivo Incorporation of Multiple Noncanonical Amino Acids into Proteins

Angew. Chem. Int. Ed. Engl. 2011, 50, 2896-2902

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Bioconjugation of L-3,4-Dihydroxyphenylalanine Containing Protein with a Polysaccharide

Bioconjugate Chehm. 2011, 22, 551-555

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On the Road towards Chemically Modified Organisms Endowed with a Genetic Firewall

Angew. Chem. Int. Ed. Engl. 2011, 50, 6960-6962

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Kernaussagen und Handlungsempfehlungen

Gentherapie in Deutschland. Eine interdisziplinäre Bestandsaufnahme 2011, Brandenburgische Akademie der Wissenschaften

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Synthetic biology of protein folding

ChemPhysChem 2010, 11, 1181-1187

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Nicht-kanonische Aminosäuren in der Synthetischen Biologie

BIOspektrum 2010,3,309-311

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Blue fluorescent amino acids as in vivo building blocks for proteins

ChemBioChem 2010,11,305-314

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Residue-specific global fluorination of Candida Antarctica lipase B in Pichia pastoris

Mol. Biosyst. 2010,6,1630-1639

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Parallel Incorporation of Different Fluorinated Amino Acids: On the Way to "Teflon" Proteins

ChemBioChem 2010,11,1505-1507

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In Vivo Double and Triple Labeling of Proteins Using Synthetic Amino Acids

Angew. Chem. Int. Ed. Engl. 2010,49,5446-5450

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Azatryptophans as tools to study polarity requirements for folding of green fluorescent protein

J. Peptide Sci. 2010,16,589-595

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ChemBioChem 2010, 11,2521-2524

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Fine tuning the N-terminal residue excision by methionine analogs

ChemBioChem 2009,10,217-220

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Den Kode des Lebens erweitern

Spektrum der Wissenschaft 2009,42-45

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Protein Iodination by Click Chemistry

ChemBioChem 2009, 10,1149-1151

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Proc. Natl. Acad. Sci. USA, 2009106,7756-7761

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Gold Fluorescent Annexin A5 as a Novel Apoptosis Detection Tool

Cytometry Part A 2009,75,626-633

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Engineering green fluorescent proteins using an expanded genetic code

Reviews in Fluoresence 2008, Springer New York,359-386

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Chemical Protein Engineering: Synthetic and Semisynthetic Peptides and Proteins

Protein Engineering 2008,22,20-64

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Molecular cloning and sequence analysis of a novel zinc-metalloprotease gene from the Salinivibrio sp. strain AF-2004 and its extracellular expression in E. coli

Gene 2008,408,196-203

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Synthetic Biology of Proteins: Tuning GFP´s Folding and Stability with Fluoroproline

PLoSONE 2008, 3

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Efficient N-terminal Glycoconjugation of Proteins by the N-End Rule

ChemBioChem 2008, 9, 1220-1224

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Photostability of Green and Yellow Fluorescent Proteins with fluorinated Chromophores, investigated by Fluorescence Correlation Spectroscopy

Biophys.Chem. 2008, 136, 38-43

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Docking of Tryptophan analogues to Tryptophanyl-tRNA Synthetase; implication for non-natural amino acid incorporation.

Biol. Chem. 2008,389,1173-1182

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Advances in the stereoselective synthesis of Homopropargylglycine

J. Peptide Sci. 2008,14,49

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Convenient Syntheses of Homopropargylglycine

J. Peptide Sci. 2008,14,1148-1150

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Intracellular uptake and inhibitory activity of aromatic fluorinated amino acids in human breast cancer cells

ChemMedChem 20083,1149-1456

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Azatryptophans endow proteins with intrinsic blue fluorescence

Proc. Natl. Acad. Sci. USA 2008105,16095-16100

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Expanding the genetic code of Saccharomyces cerevisiae with methionine analogs

Yeast 200825,775-786

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Basic Requirements for reprogramming intracellular protein translation

Molecular Interactions - Bringing Chemistry to Life. Proceedings of the International Beilstein Workshop 2007,93-109

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Back into the Fold - Protein Engineering Protocols (Series: Methods in Molecular Biology, Vol. 352)

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Natural history and experimental evolution of the genetic code

Appl. Microbiol. Biotechnol. 200774,739

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In Vivo Chemoenzymatic Control of N-terminal Processing in Recombinant Human Epidermal Growth Factor

ChemBioChem 20078,2227-2232

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High performance fluorescence scanning of tryptophan with Tecan´s Safire microplate reader

Tecan Journal 20062,13-16

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Veränderung des genetischen Codes

BIOspektrum 200612,41-43

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In vivo engineering of proteins with nitrogen-containing tryptophan analogs

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Aminotryptophan-containing barstar: Structure-functions trade-off in protein design and engineering with an expanded genetic code

Biochem. Biophys. Acta - Proteomics 1674 20061764,1147-1158

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Engineering the Genetic Code - Expanding the Amino Acid Repertoire for the Design of Novel Proteins

2005,WILEY-VHC

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Evolutionary Methods in Biotechnology. Clever Tricks for Directed Evolution

Angewandte Chemie 2005, 117, 3175-3176

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Cross-reactivity studies of rMOG(ED) with synthetic putative autoantigens CSF114(Glc) and [N-31(Glc)]hMOG(30-50) in multiple sclerosis patients´sera

Understanding Biology Using Peptides 2005, American Peptide Society, 769-770

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Structural and spectral response of the Aequorea victoria Green Fluorescent Proteins to the chromophore fluorination

Biochemistry 2005, 44, 3663-3672

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Peptidyl Prolyl cis/trans-Isomerases: Comparative Reactivities of Cyclophilins, FK506-Binding Proteins, and Parvulins with Fluorinated Oligopeptide and Protein Substrates

Biochemistry 2005, 44, 16026-16034

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Adding new tools to expressed protein ligation

ChemBioChem 2004, 5, 1176-1179

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Designing novel spectral classes of proteins with tryptophan-expanded genetic code

Biol. Chem. 2004, 385, 893-904

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Prolegomena to future efforts on genetic code engineering by expanding its amino acid repertoire

Angew. Chem. Int. Ed. 2004, 43, 3387-3428

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Probing the Role of Tryptophans in Aequorea victoria Green Fluorescent Proteins with an Expanded Genetic Code

Biol. Chem. 2004, 385, 191-202

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Crystallographic Evidence for Isomeric Chromophores in 3-Fluorotyrosyl-Green Fluorescent Protein

ChemBioChem 2004, 5, 720-722

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Efforts toward the design of "Teflon" proteins: In vivo translation with trifluorinated leucine and methionine analogues

Chem. & Biodiv. 2004, 1, 1465-1475

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Bae, J., Rubini, M., Jung, G., Wiegand, G., Seifert, M. H. J., Azim, M. K., Kim, J. S., Zumbusch, A., Holak, T. A., Moroder, L., Huber, R. and Budisa, N.
Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins

J. Mol. Biol. 2003, 328, 977-1202

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Cell free Protein Expression

2003, Springer Verlag

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Global replacement of tryptophan with amino-tryptophans generates non-invasive protein-based optical pH sensors

Angew. Chem. Int. Ed. Engl. 2002, 41, 4066-4069

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Slow Conformational Exchange Processes in Green Fluorescent Protein Variants evidenced by NMR Spectroscopy

J. Am. Chem. Soc. 2002, 124, 7932-7942

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Proteins with beta-(thienopyrrolyl)alaninies as alternative chromophores and pharmaceutically active amino acids

Prot. Sci. 2001, 10, 1281-1292

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Incorporation of beta-selenolo[3,2-b]pyrrolyl-alanine into proteins for phase determination in protein X-ray crystallography

J. Mol. Biol. 2001, 309, 925-936

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Fluoroprolines as tools for protein design and engineering

Angew. Chem. Int. Ed. Engl. 2001, 40, 923-925

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Synthesis of b-(1-Azulenyl)-L-Alanine as a potential blue-coloures fluorescent tryptophan analogue and its use in peptide synthesis

J. Peptide Sci. 2000, 6, 139-144

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Tetrahedron 2000, 56, 9431-9442

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Non-invasive tracing of recombinant proteins with "fluorophenylalanine-fingers

Anal. Biochem. 2000, 284, 29-34

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Toward the experimental codon reassignment in vivo: protein building with an expanded amino acid repertoire

FASEB 1999, 13, 41-51

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Atomic mutations at the single tryptophan residue of human recombinant annexin V: Effects on structure, stability and activity

Biochemistry 1999, 38, 10649-10659

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Structure and evolution of the genetic code viewed from the perspective of the experimentally amino acid repertoire in vivo

Cell. Mol. Life Sci. 1999, 55, 1626-1635

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Probing protein stability with non-natural amino acids

Croat. Chem. Acta 1998, 71, 179-187

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Atomic mutations in annexin V. Thermodynamic studies of isomorphous protein variants

Eur. J. Biochem. 1998, 253, 1-9

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Chalcogen-analogs of amino acids. Their use in X-ray crystallographic and folding studies of peptides and proteins

Biol. Chem. 1997, 378, 211-218

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Bioincorporation of telluromehionine into proteins: A promising new approach for X-ray structure analysis of proteins

J. Mol. Biol. 1997, 270, 616-623

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Phage P22 Tailspike protein: Crystal structure of the head binding domain at 2.3 Å, fully refined structure of the endorhamnosidase at 1.56 Å resolution, and the molecular basis of O-antigen recognition and cleavage

J. Mol. Biol. 1997, 267, 865-880

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On the role of conserved methionine in metzincins: an active selenomethionine 215-variant of leukocyte collagenase with similar structure as the wild-type form

J. Prot. Chem. 1997, 16, 637-650

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A new efficient synthesis of acetyltelluro- and acetylselenomethionine and their use in the biosynthesis of heavy-atom protein analogues

J. Am. Chem. Soc. 1996, 118, 913-914

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Budisa, N., Steipe, B., Demange, P., Eckerskorn, C., Kellermann, J. and Huber, R.
High level biosynthetic substitution of methionine in proteins by its analogues 2-aminohexanoic acid, selenomethionine, telluromethionine and ethionine in Escherichia coli

Eur. J. Biochem. 1995, 230, 788-796

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Enterotoxicity of Staphylococcus aureus strains isolated from foods and clinical materials

Food Technol. Biotechnol. 1992, 30, 79-82